PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do014239.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 238aa    MW: 25967.5 Da    PI: 5.4658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do014239.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.12.5e-1172119454
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                 ++  rE+ RRd++N++f eL +++ +    ++ Kl+Ka iL  A + + +L
  Do014239.1  72 SKACREKMRRDKLNDRFLELSSVMNPG---KQAKLDKANILSDAARMLAQL 119
                 6789**********************9...9**************999988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.63E-1365135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.04968119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.20E-971124No hitNo description
PfamPF000108.2E-972119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-1273141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-874125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd146861.35E-5127166No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDCVGGRDPV EDFLLGGAGD DGDLAIFCDG VPSLTGDGGL GIDGVSGDAC GFEQSTLGKR  60
GRDEPSSCGP KSKACREKMR RDKLNDRFLE LSSVMNPGKQ AKLDKANILS DAARMLAQLK  120
GEAEKLKESN EKLRENIKDL KDEKNELREE KVRLKEEKER LEQQVKAMSA APTGYVPHLP  180
HPAAYHPAAF APFMPPQQAP TNKSAPIPSV FPGMAMWQWL PQTVVDTTQD PKLWPPNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0409200.0BT040920.1 Zea mays full-length cDNA clone ZM_BFc0152D09 mRNA, complete cds.
GenBankEU9655850.0EU965585.1 Zea mays clone 287196 DNA binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004952164.11e-146PREDICTED: transcription factor ILR3-like
SwissprotQ9FH373e-59ILR3_ARATH; Transcription factor ILR3
TrEMBLK3YVD61e-146K3YVD6_SETIT; Uncharacterized protein
STRINGSb04g001200.11e-151(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81733646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.12e-36bHLH family protein